8 Format of a GenoDive input file! 9 Supported Data Types! 11 Importing data from other programs! 12 Converting Data! 13 Transformation of genetic marker data! 15 Transformation of distances and ecological data! 17 Fill in Missing Data! 19 Setting Population Groups! 21 Creating a matrix of distance classes! 23 Shuffle Data! 25 Interface topics! Understanding the interface! 28 The Inspector panel! 29 Setting the preferences! 30 Searching! 31 Selecting, including, and excluding data! 32 Special include options! 34 Viewing the data as text and as a matrix! 36 Multithreaded analyses! 38 Saving multiple datasets or results! 39 Available analyses! Allele frequencies! 41 Analysis of Molecular Variance! 42 Assign Clones! 44 Assign Clones - Step 1: Distances! 45 Assign Clones - Step 2: Threshold! 47ģ Assign Clones - Step 3: Test for Clonal Structure! 49 Assign Clones - Last Step: Output Options! 51 Calculate Distances! 52 Genetic Distances! 53 Non-Genetic Distances! 56 Estimating Clonal Diversity! 57 Clonal Diversity (background)! 58 Compare Groups! 60 Correction of allele dosage in polyploids! 62 Genetic Diversity! 63 G-statistics! 65 Hardy-Weinberg equilibrium! 67 Hybrid Index! 68 K-Means clustering! 69 K-Means clustering (background)! 71 Mantel tests! 73 Pairwise population differentiation! 75 Population Assignment! 77 Principal Components Analysis! 79 Spatial Autocorrelation! 81 Miscellaneous! How to cite GenoDive:! 84 Requirements! 85 License! 86 Version History! 87 Cited References:! 92 GenoDive Manual 3ĥ Discover GenoDive GenoDive is a user-friendly program to perform population genetics analyses. 4 Discover GenoDive! 5 Known Issues and Limitations! 7 Data topics!. Universiteit van AmsterdamĢ Contents: About GenoDive!.
Software for analysis of population genetic data April 2013 Patrick Meirmans I.B.E.D.
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